Publications

Approximating Nonequilibrium Processes Using a Collection of Surrogate Diffusion Models
C.P. Calderon, R. Chelli, J. Chem. Phys., 128, 145103 (2008).

Local Diffusion Models for Stochastic Reacting Systems:Estimation Issues in Equation-free Numerics
C.P. Calderon, Mol. Sim., (to appear).

Fitting Effective Diffusion Models to Data Associated with a "Glassy Potential": Estimation, Classical Inference Procedures, and Some Heuristics
C.P. Calderon, Multiscale Modeling & Simulation, 6, 656 (2007).

On the Use of Local Diffusion Models in Path Ensemble Averaging in Potential of Mean Force Computations
C.P. Calderon, J. Chem. Phys., 126, 084106 (2007).

Coarse-Graining the Cyclic Lotka-Volterra Model: SSA and local maximum likelihood estimation
C.P. Calderon, G. A. Tsekouras, A. Provata, and I.G. Kevrekidis, (in Model Reduction and Coarse-Graining Approaches for Multiscale Phenomena, A. Gorban, N. Kazantzis, Y. Kevrekidis, H.C. Ottinger, C. Theodoropoulos [Eds.], Springer, Berlin--Heidelberg--New York, 2006).

Comment on "Reversing the Perturbation in Nonequilibrium Molecular Dynamics: An Easy Way to Calculate the Shear Viscosity of Fluids"
C.P. Calderon, Ashurst, W.T., Phys. Rev. E, 66, 013201 (2002).

In Preparation/Submitted:

Quantifying Multiscale Noise Sources in Single-Molecule Experiments via Pathwise Statistical Inference Procedures
C.P. Calderon, W.-H Chen, K.-J. Lin, .N.Harris, C.-H. Kiang and Dennis D. Cox.

Inferring Long Time Scale Information using Stochastic Models Calibrated from Short Simulations: Application to Gramicidin A
C.P. Calderon, L. Janosi, and I. Kosztin.

Pathwise Inference Procedures for Modeling both Overdamped and Underdamped Nonequilibrium Simulations
C.P. Calderon, L. Janosi, and I. Kosztin.

Measuring the Influence of Hidden Conformational Details with Pathwise Inference Procedures in Equilibrium Simulations
C.P. Calderon and K. Arora.