Field Descriptions

Field Number	Field Name	Description
1	barcode	barcode: 8 digit numeric
2	clock posn	clock position: numeric 1 to 12 as in hours in a clock.
3	eem #	EEM #: numeric sequence of EEMs measured per patient
4	eem date	EEM date: 8 digit numeric, representing date EEM was measured
5	box id	box id: numeric, indicates box number
6	probe id	probe id: numeric, the probe used
7	provider	provider: numeric, indicates provider
8	tissue type	tissue type: numeric, indicates tissue type
9	CIN Dx, numeric	worst dx, numeric: indicates worst dx for this measurement
10	age	age: numeric, indicates age of patient in years
11	race, numeric	race, num: numeric, indicates race
12	clinical mens stat	clinical menopausal status, num: indicates menopausal status as supplied by patient.
13	biological mens stat	biological menopausal status, num: indicates menopausal status based on FSH level.
14	FSH	FSH: numeric, indicates hormonal levels test results
15	ever smoked	ever smoked: numeric
16	never gave birth	never gave birth: numeric
17	# vaginal deliveries	# vaginal deliveries: numeric, indicates how many vaginal deliveries as supplied by patient.
18	current hormones	current hormones: numeric, indicates if patient is taking hormone replacement therapy
19	age at menarche	age at menarche: numeric, indicates age on years at first menstruation.
20	HPV high risk	HPV high risk
21	HPV low risk	HPV low risk
22	HPV negative	HPV negative
23	referral pap dx	referral PAP dx: numeric diagnosis from referral Pap
24	clinic	clinic: numeric, indicates clinic number
25	operator ok	operator ok: numeric, indicates if operator ok'd measurement or rejected it.
............................Added at DC Build
499	CIN worst DX per patient
500	IR leakage Flag	Infrared Leakage was detected at 380 excitation and corrected on Oct 01 2002. All measurements prior to this date required x380 to be calculated by averaging x370 and x390 spectra.
501	NIMI Dx this measurement/sample	NIMI Dx this measurement
502	NIMI worst DX per patient	NIMI DX worst patient: patient's worst diagnosis

Variable Codes

Barcode

barcode: 8 digit numeric
AAABCCCC
e.g. 24510011
AAA:	indicates study number, e.g.:245
B:	indicates clinic number, e.g.:1 for MDA, 2 for LBJ, 5 for BCCA
CCCC:	indicates patient number, e.g. 0011

Clock Position

clock position: numeric 1 to 12 as in hours in a clock.
e.g. 12
NOTE: clock position 0 (zero) was added to indicate ecc or endo cervical canal.

EEM #

EEM #: numeric sequence of EEMs measured per patient

e.g. 1

EEM date

EEM date: 8 digit numeric, representing date EEM was measured in MMDDYYYY format.

e.g. 12242000

Box id

box id: numeric, indicates box number, e.g.: 3 for 714319
id	code
1	1
3	2
4	3
714319	4
71419	5
	-999

Probe ID

probe id: numeric, the probe used, e.g. 4 for probe pp001
id	code
1	1
2	2
3	3
5	4
6	5
PP001	6
PP001	7
	-999

Provider

provider: numeric, indicates provider, e.g. 6 for provider lb
prov	code
mf	1
AS	2
js	3
as	2
kr	5
as.	2
am	7
kb	8
vh	9
lb	10
mb	11
mb	11
te	13
dm	14
lb	10
ls	16
	-999

Tissue Type

tissue type: numeric, indicates tissue type, e.g. 2 for columnar
squamous	1
columnar	2
transitional	3
	-999

CIN Dx

worst dx, numeric: indicates worst dx for this measurement, e.g. 10 for mild dysplasia.
ACIS	6
Sqcis (CIN III)	7
Severe dysplasia (CIN III)	8
Moderate dysplasia (CIN II)	9
Mild dysplasia (CIN I)	10
HPV associated changes	11
Squamous atypia, suggestive of dysplasia	12
negative for dysplasia	30
No diagnosis possible	99

Age

age: numeric, indicates age of patient in years. e.g. 24

Race

race, num: numeric, indicates race, e.g. 3 for hispanic.
White	1
Black	2
Hispanic	3
Native American	4
Asian	5
Other	6

Clin Mens stat

clinical menopausal status, num: indicates menopausal status as supplied by patient.
pre	1
post	2
peri	3
	-999

biological mens stat

biological menopausal status, num: indicates menopausal status based on FSH level.
pre	1
post	2
peri	3
N/A	4
	-999

FSH

FSH: numeric, indicates hormonal levels test results

NOTE: for FSH levels less than 0.1, the datacube reflects 0.1.

Ever Smoked

ever smoked: numeric
Yes	1
No	2
	-999

Never Gave Birth

never gave birth: numeric
Yes	1
No	0
	-999

Number vaginal deliveries

# vaginal deliveries: numeric, indicates how many vaginal deliveries as supplied by patient.

e.g. 3 for 3 births

Current Hormones

current hormones: numeric, indicates if patient is taking hormone replacement therapy
Yes	1
No	0
	-999

Age at menarche

age at menarche: numeric, indicates age on years at first menstruation.

e.g. 12

HPV High Risk

HPV high risk
Yes	1
No	0
	-999

HPV low risk

HPV low risk
Yes	1
No	0
	-999

HPV negative

HPV negative
Yes	1
No	0
	-999

referral pap dx

referral PAP dx: numeric diagnosis from referral Pap
0	Negative
1	AGUS
2	ASCUS
3	Koilocytosis
4	CIN I
5	CIN II
6	CIN III
7	CIS
8	Microinvasion
9	ICC
99	No Dx/Unspecified

Clinic

clinic: numeric, indicates clinic number, e.g.:1 for MDA, 2 for LBJ, 5 for BCCA.

operator ok

operator ok: numeric, indicates if operator ok'd measurement or rejected it.
Yes	1
No	0
	-999

................................Following Fields are not in database but were added at datacube build

IR leakage Flag

IR leakage Flag
Infrared Leakage was detected at 380 excitation and corrected on Oct 01 2002. All measurements
prior to this date required x380 to be calculated by averaging x370 and x390 spectra.
Yes	1
No	0

NIMI Dx this measurement/sample

NIMI Dx this measurement
-1	Not available
1	SQN
2	CON
3	METP
4	INFL
5	LGSIL
6	HGSIL
7	ACIS
8	TRN: transitional (ecc for endo cervical canal) normal

NIMI worst DX per patient

NIMI DX worst patient: patient's worst diagnosis
-1	Not available
1	SQN
2	CON
3	METP
4	INFL
5	LGSIL
6	HGSIL
7	ACIS
8	TRN: transitional (ecc for endo cervical canal) normal