Modeling Signals in DNA

Table of Contents

Modeling Signals in DNA

Objectives

Dogma of molecular biology

Gene regulation

Gene structure in Eukaryotes

Regulatory logic

DNA as a sequence of independent random variables

Association test

Weight matrices

Maximal dependence decomposition

Detection of long repeats

More accuracy

r-scans (1-scans)

Partitions of the unit interval

Distribution of the maximum

Asymptotic expressions

Generalizations

Analysis of Patterns

Counting word occurrences with overlaps

Variance of the repeat count

Remarks

Email: kimmel@rice.edu

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