\relax 
\citation{n1}
\citation{n2}
\citation{n3}
\citation{n4}
\@writefile{toc}{\contentsline {chapter}{\numberline {1}Genome-wide linkage studies}{1}}
\@writefile{toc}{\contentsline {author}{Cathryn M. Lewis}{1}}
\@writefile{lof}{\addvspace {10pt}}
\@writefile{lot}{\addvspace {10pt}}
\@writefile{toc}{\contentsline {section}{\numberline {1.1}Introduction}{1}}
\citation{n5}
\citation{n6}
\citation{n7}
\citation{n8}
\citation{n9}
\@writefile{toc}{\contentsline {section}{\numberline {1.2}Statistical methods for meta-analysis of linkage studies}{2}}
\@writefile{toc}{\contentsline {section}{\numberline {1.3}Genome Search Meta-Analysis method }{2}}
\citation{n9}
\citation{n9}
\citation{n10}
\newlabel{RF1}{{1.3}{4}}
\@writefile{lot}{\contentsline {table}{\numberline {1.1}{\ignorespaces Common sources of incomplete data in the GSMA, and possible solutions}}{4}}
\newlabel{Table:Problems}{{1.1}{4}}
\citation{n11}
\citation{n12}
\citation{n12}
\citation{n12}
\citation{n13}
\citation{n14}
\citation{n15}
\citation{n13}
\@writefile{toc}{\contentsline {section}{\numberline {1.4}Collaborative or published information? }{6}}
\citation{n12}
\citation{n16}
\citation{n13}
\citation{n12}
\citation{n17}
\citation{n12}
\@writefile{toc}{\contentsline {section}{\numberline {1.5}Summed ranks or average ranks?}{7}}
\@writefile{toc}{\contentsline {section}{\numberline {1.6}Bin width}{7}}
\@writefile{toc}{\contentsline {section}{\numberline {1.7}Weighted analysis}{7}}
\newlabel{RF2}{{1.6}{8}}
\@writefile{lot}{\contentsline {table}{\numberline {1.2}{\ignorespaces Summary of published GSMA studies (\textit  {geno}: genotyped individuals; \textit  {aff}: affecteds; \textit  {arp}: affected relative pairs; \textit  {asp}: affected sib pairs; Significance -- Nom: nominal; Sugg: suggestive; Gen: genome-wide)}}{8}}
\newlabel{Table:Studies}{{1.2}{8}}
\citation{n18}
\@writefile{lot}{\contentsline {table}{\numberline {1.3}{\ignorespaces Comparison of properties affecting choice of bin width}}{9}}
\newlabel{Table:Bins}{{1.3}{9}}
\@writefile{toc}{\contentsline {section}{\numberline {1.8}GSMA software}{9}}
\citation{n12}
\citation{n14}
\citation{n15}
\citation{n12}
\@writefile{toc}{\contentsline {section}{\numberline {1.9}Power to detect linkage using the GSMA}{10}}
\citation{n19}
\citation{n12}
\citation{n20}
\citation{n16}
\@writefile{toc}{\contentsline {section}{\numberline {1.10}Extensions of the GSMA }{11}}
\@writefile{lof}{\contentsline {figure}{\numberline {1.1}{\ignorespaces Critical values of the average rank required for genome-wide, suggestive, and nominal evidence for linkage, by number of bins.}}{12}}
\newlabel{Fig:rankpval}{{1.1}{12}}
\citation{n21}
\citation{n22}
\citation{n22}
\citation{n16}
\citation{n14}
\@writefile{toc}{\contentsline {section}{\numberline {1.11}Limitations of the GSMA }{13}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.11.1}File drawer problem}{13}}
\citation{n22}
\citation{n3}
\citation{n9}
\citation{n13}
\citation{n14}
\citation{n15}
\citation{n16}
\citation{n17}
\citation{n20}
\citation{n21}
\citation{n23}
\citation{n24}
\citation{n25}
\citation{n26}
\citation{n27}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.11.2}Garbage in, garbage out}{14}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.11.3}Apples and Oranges}{14}}
\@writefile{toc}{\contentsline {section}{\numberline {1.12}Disease studies using the GSMA}{14}}
\citation{n9}
\citation{n16}
\citation{n26}
\citation{n13}
\citation{n14}
\citation{n28}
\citation{n26}
\citation{n23}
\citation{n21}
\citation{n25}
\citation{n17}
\citation{n13}
\citation{n18}
\citation{n7}
\citation{n7}
\@writefile{toc}{\contentsline {section}{\numberline {1.13}The Multiple Scan Probability method (MSP)}{15}}
\citation{n7}
\citation{n29}
\citation{n14}
\citation{n15}
\citation{n22}
\@writefile{toc}{\contentsline {section}{\numberline {1.14}Conclusions}{16}}
\@writefile{toc}{\contentsline {section}{\numberline {1.15}Acknowledgements}{17}}
\@setckpt{Lewis2}{
\setcounter{page}{18}
\setcounter{equation}{0}
\setcounter{enumi}{3}
\setcounter{enumii}{0}
\setcounter{enumiii}{0}
\setcounter{enumiv}{0}
\setcounter{footnote}{0}
\setcounter{mpfootnote}{0}
\setcounter{part}{0}
\setcounter{chapter}{1}
\setcounter{section}{15}
\setcounter{subsection}{0}
\setcounter{subsubsection}{0}
\setcounter{paragraph}{0}
\setcounter{subparagraph}{0}
\setcounter{example}{0}
\setcounter{theorem}{0}
\setcounter{proposition}{0}
\setcounter{lemma}{0}
\setcounter{corollary}{0}
\setcounter{definition}{0}
\setcounter{exercise}{0}
\setcounter{dummy}{0}
\setcounter{figure}{1}
\setcounter{table}{3}
\setcounter{r@tfl@t}{2}
\setcounter{parentequation}{0}
\setcounter{NAT@ctr}{0}
}