\relax 
\citation{RischMeri}
\citation{Altmuller2001}
\citation{Demenais2003}
\citation{Levinson2002}
\@writefile{toc}{\contentsline {chapter}{\numberline {5}Genome-wide linkage studies}{63}}
\@writefile{toc}{\contentsline {author}{Cathryn M. Lewis}{63}}
\@writefile{lof}{\addvspace {10pt}}
\@writefile{lot}{\addvspace {10pt}}
\@writefile{toc}{\contentsline {section}{\numberline {5.1}Introduction}{63}}
\citation{Province2001}
\citation{Cordell2001}
\citation{Badner2002b}
\citation{Gu2001}
\citation{Wise1999}
\@writefile{toc}{\contentsline {section}{\numberline {5.2}Statistical methods for meta-analysis of linkage studies}{64}}
\@writefile{toc}{\contentsline {section}{\numberline {5.3}Genome Search Meta-Analysis method }{64}}
\citation{Wise1999}
\citation{Wise1999}
\citation{North2003}
\newlabel{RF1}{{5.3}{66}}
\@writefile{lot}{\contentsline {table}{\numberline {5.1}{\ignorespaces Common sources of incomplete data in the GSMA, and possible solutions}}{66}}
\newlabel{Table:Problems}{{5.1}{66}}
\citation{Lander1995}
\citation{Levinson2003}
\citation{Levinson2003}
\citation{Levinson2003}
\citation{vanHeel2004}
\citation{Lewis2003}
\citation{Segurado2003}
\citation{vanHeel2004}
\@writefile{toc}{\contentsline {section}{\numberline {5.4}Collaborative or published information? }{68}}
\citation{Levinson2003}
\citation{Fisher2003}
\citation{vanHeel2004}
\citation{Levinson2003}
\citation{Fisher2005}
\@writefile{toc}{\contentsline {section}{\numberline {5.5}Summed ranks or average ranks?}{69}}
\@writefile{toc}{\contentsline {section}{\numberline {5.6}Bin width}{69}}
\citation{Levinson2003}
\citation{Pardi2005}
\@writefile{toc}{\contentsline {section}{\numberline {5.7}Weighted analysis}{70}}
\@writefile{toc}{\contentsline {section}{\numberline {5.8}GSMA software}{70}}
\newlabel{RF2}{{5.6}{71}}
\@writefile{lot}{\contentsline {table}{\numberline {5.2}{\ignorespaces Summary of published GSMA studies (\textit  {geno}: genotyped individuals; \textit  {aff}: affecteds; \textit  {arp}: affected relative pairs; \textit  {asp}: affected sib pairs; Significance -- Nom: nominal; Sugg: suggestive; Gen: genome-wide)}}{71}}
\newlabel{Table:Studies}{{5.2}{71}}
\citation{Levinson2003}
\citation{Lewis2003}
\citation{Segurado2003}
\@writefile{lot}{\contentsline {table}{\numberline {5.3}{\ignorespaces Comparison of properties affecting choice of bin width}}{72}}
\newlabel{Table:Bins}{{5.3}{72}}
\@writefile{toc}{\contentsline {section}{\numberline {5.9}Power to detect linkage using the GSMA}{72}}
\citation{Levinson2003}
\citation{Dempfle2004}
\citation{Levinson2003}
\citation{Babron2003}
\citation{Fisher2003}
\@writefile{lof}{\contentsline {figure}{\numberline {5.1}{\ignorespaces Critical values of the average rank required for genome-wide, suggestive, and nominal evidence for linkage, by number of bins.}}{74}}
\newlabel{Fig:rankpval}{{5.1}{74}}
\citation{Marazita2004}
\citation{Zintzaras2005}
\citation{Zintzaras2005}
\citation{Fisher2003}
\citation{Lewis2003}
\@writefile{toc}{\contentsline {section}{\numberline {5.10}Extensions of the GSMA }{75}}
\citation{Zintzaras2005}
\citation{Demenais2003}
\citation{Wise1999}
\citation{vanHeel2004}
\citation{Lewis2003}
\citation{Segurado2003}
\citation{Fisher2003}
\citation{Fisher2005}
\citation{Babron2003}
\citation{Marazita2004}
\citation{Chiodini2003}
\citation{Williams2002}
\citation{Koivukoski2004}
\citation{Sagoo2004}
\citation{Johnson2005}
\@writefile{toc}{\contentsline {section}{\numberline {5.11}Limitations of the GSMA }{76}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.11.1}File drawer problem}{76}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.11.2}Garbage in, garbage out}{76}}
\@writefile{toc}{\contentsline {subsection}{\numberline {5.11.3}Apples and Oranges}{76}}
\citation{Wise1999}
\citation{Fisher2003}
\citation{Sagoo2004}
\citation{vanHeel2004}
\citation{Lewis2003}
\citation{ODonovan2003}
\citation{Sagoo2004}
\citation{Chiodini2003}
\citation{Marazita2004}
\citation{Koivukoski2004}
\citation{Fisher2005}
\citation{vanHeel2004}
\citation{Pardi2005}
\@writefile{toc}{\contentsline {section}{\numberline {5.12}Disease studies using the GSMA}{77}}
\citation{Badner2002b}
\citation{Badner2002b}
\citation{Badner2002b}
\citation{Badner2002a}
\citation{Lewis2003}
\citation{Segurado2003}
\citation{Zintzaras2005}
\@writefile{toc}{\contentsline {section}{\numberline {5.13}The Multiple Scan Probability method (MSP)}{78}}
\@writefile{toc}{\contentsline {section}{\numberline {5.14}Conclusions}{78}}
\@writefile{toc}{\contentsline {section}{\numberline {5.15}Acknowledgements}{79}}
\@setckpt{Lewis/Lewis3}{
\setcounter{page}{80}
\setcounter{equation}{0}
\setcounter{enumi}{3}
\setcounter{enumii}{0}
\setcounter{enumiii}{0}
\setcounter{enumiv}{0}
\setcounter{footnote}{0}
\setcounter{mpfootnote}{0}
\setcounter{part}{0}
\setcounter{chapter}{5}
\setcounter{section}{15}
\setcounter{subsection}{0}
\setcounter{subsubsection}{0}
\setcounter{paragraph}{0}
\setcounter{subparagraph}{0}
\setcounter{example}{0}
\setcounter{theorem}{0}
\setcounter{proposition}{0}
\setcounter{lemma}{0}
\setcounter{corollary}{0}
\setcounter{definition}{0}
\setcounter{exercise}{0}
\setcounter{dummy}{0}
\setcounter{figure}{1}
\setcounter{table}{3}
\setcounter{NAT@ctr}{0}
\setcounter{r@tfl@t}{2}
\setcounter{parentequation}{0}
\setcounter{subfigure}{0}
\setcounter{lofdepth}{1}
\setcounter{subtable}{0}
\setcounter{lotdepth}{1}
}