\begin{thebibliography}{97}
\providecommand{\natexlab}[1]{#1}
\providecommand{\url}[1]{\texttt{#1}}
\providecommand{\urlprefix}{URL }
\expandafter\ifx\csname urlstyle\endcsname\relax
  \providecommand{\doi}[1]{doi:\discretionary{}{}{}#1}\else
  \providecommand{\doi}{doi:\discretionary{}{}{}\begingroup
  \urlstyle{rm}\Url}\fi

\bibitem[{Allison and Heo(1998)}]{Allison1998}
Allison, D.B. and M.~Heo, Meta-analysis of linkage data under worst-case
  conditions: a demonstration using the human {OB} region, \emph{Genetics},
  148:859--865, 1998.

\bibitem[{Alter et~al.(2000)Alter, Brown, and Botstein}]{Alter2000}
Alter, O., P.O. Brown, and D.~Botstein, Singular value decomposition for
  genome-wide expression data processing and modeling, \emph{Proceedings of the
  National Academy of Sciences USA}, 97:10101--10106, 2000.

\bibitem[{Altmuller et~al.(2001)Altmuller, Palmer, Fischer
  et~al.}]{Altmuller2001}
Altmuller, J. et~al., Genomewide scans of complex human diseases: True linkage
  is hard to find, \emph{American Journal of Human Genetics}, 69:936--950,
  2001.

\bibitem[{An et~al.(2005)An, Freedman, Hanis et~al.}]{An2005}
An, P. et~al., Genome-wide linkage scans for fasting glucose, insulin, and
  insulin resistance in the {N}ational {H}eart, {L}ung, and {B}lood {I}nstitute
  {F}amily {B}lood {P}ressure {P}rogram: evidence of linkages to chromosome
  7q36 and 19q13 from meta-analysis, \emph{Diabetes}, 54:909--914, 2005.

\bibitem[{Babron et~al.(2003)Babron, Nilsson, Adamovic et~al.}]{Babron2003}
Babron, M.C. et~al., Meta and pooled analysis of {E}uropean coeliac disease
  data, \emph{European Journal of Human Genetics}, 11:828--834, 2003.

\bibitem[{Badner and Gershon(2002{\natexlab{a}})}]{Badner2002a}
Badner, J.A. and E.S. Gershon, Meta-analysis of whole-genome linkage scans of
  bipolar disorder and schizophrenia, \emph{Molecular Psychiatry}, 7:405--411,
  2002{\natexlab{a}}.

\bibitem[{Badner and Gershon(2002{\natexlab{b}})}]{Badner2002b}
Badner, J.A. and E.S. Gershon, Regional meta-analysis of published data
  supports linkage of autism with markers on chromosome 7, \emph{Molecular
  Psychiatry}, 7:56--66, 2002{\natexlab{b}}.

\bibitem[{Beer et~al.(2002)Beer, Kardia, Huang et~al.}]{Beer2002}
Beer, D.G. et~al., Gene-expression profiles predict survival of patients with
  lung adenocarcinoma, \emph{Nature Medicine}, 9:816--824, 2002.

\bibitem[{Benito et~al.(2004)Benito, Parker, Du et~al.}]{Benito2004}
Benito, M. et~al., Adjustment of systematic microarray data biases,
  \emph{Bioinformatics}, 20:105--114, 2004.

\bibitem[{Benjamini and Hochberg(2000)}]{Benjamini1995}
Benjamini, Y. and Y.~Hochberg, Controlling the false discovery rate: a
  practical and powerful approach to multiple testing, \emph{Journal of the
  Royal Statistical Society, Series B}, 57:289--300, 2000.

\bibitem[{Bhattacharjee et~al.(2001)Bhattacharjee, Richards, Staunton
  et~al.}]{Bhattacharjee2001}
Bhattacharjee, A. et~al., Classification of human lung carcinomas by mrna
  expression profiling reveals distinct adenocarcinoma subclasses,
  \emph{Proceedings of the National Academy of Sciences USA}, 98:13790--13795,
  2001.

\bibitem[{Brazma et~al.(2001)Brazma, Hingamp, Quackenbush et~al.}]{Brazma2001}
Brazma, A. et~al., Minimum information about a microarray experiment {(MIAME)}
  -- toward standards for microarray data, \emph{Nature Genetics}, 29:373,
  2001.

\bibitem[{Chiodini and Lewis(2003)}]{Chiodini2003}
Chiodini, B.D. and C.M. Lewis, Meta-analysis of 4 coronary heart disease
  genome-wide linkage studies confirms a susceptibility locus on chromosome 3q,
  \emph{Arteriosclerosis Thrombosis and Vascular Biology}, 23:1863--1868, 2003.

\bibitem[{Choi et~al.(2003)Choi, Yu, Kim et~al.}]{Choi2003}
Choi, J.K. et~al., Combining multiple microarray studies and modeling
  interstudy variation, \emph{Bioinformatics}, 19 Suppl 1:i84--i90, 2003.

\bibitem[{Cooperative"(2001)}]{TMSGC}
Cooperative", T.T.M.S.G., A meta-analysis of genomic screens in multiple
  sclerosis, \emph{Multiple Sclerosis}, 7:3--11, 2001.

\bibitem[{Cordell(2001)}]{Cordell2001}
Cordell, H.J., Sample size requirements to control for stochastic variation in
  magnitude and location of allele-sharing linkage statistics in affected
  sibling pairs, \emph{Annals of Human Genetics}, 65:491--502, 2001.

\bibitem[{Demenais et~al.(2003)Demenais, Kanninen, Lindgren
  et~al.}]{Demenais2003}
Demenais, F. et~al., A meta-analysis of four {E}uropean genome screens ({GIFT}
  consortium) shows evidence for a novel region on chromosome 17p11.2-q22
  linked to type 2 diabetes, \emph{Human Molecular Genetics}, 12:1865--1873,
  2003.

\bibitem[{Dempfle and Loesgen(2004)}]{Dempfle2004}
Dempfle, A. and S.~Loesgen, Meta-analysis of linkage studies for complex
  diseases: An overview of methods and a simulation study, \emph{Annals of
  Human Genetics}, 68:69--83, 2004.

\bibitem[{Dobbin et~al.(2005)Dobbin, Beer, Meyerson et~al.}]{Dobbin2005}
Dobbin, K.K. et~al., Interlaboratory comparability study of cancer gene
  expression analysis using oligonucleotide microarrays, \emph{Clinical Cancer
  Research}, 11:565--572, 2005.

\bibitem[{Etzel and Guerra(2002)}]{Etzel2002}
Etzel, C. and R.~Guerra, Meta-analysis of genetic-linkage analysis of
  quantitative-trait loci, \emph{American Journal of Human Genetics},
  71:56--65, 2002.

\bibitem[{Etzel et~al.(2005)Etzel, Liu, and Costello}]{Etzel2005}
Etzel, C.J., M.~Liu, and T.J. Costello, An updated meta-analysis approach for
  genetic linkage, \emph{BMC Genetics}, 6 Suppl 1:S43, 2005.

\bibitem[{Faraway(1993)}]{Faraway1993}
Faraway, J.J., Distribution of the admixture test for the detection of linkage
  under heterogeneity, \emph{Genetic Epidemiology}, 10:75--83, 1993.

\bibitem[{Feingold et~al.(1993)Feingold, Brown, and Siegmund}]{Feingold1993}
Feingold, E., P.O. Brown, and D.~Siegmund, {G}aussian models for genetic
  linkage analysis using complete high-resolution maps of identity by descent,
  \emph{American Journal of Human Genetics}, 53:234--251, 1993.

\bibitem[{Fisher(1925)}]{Fisher1925}
Fisher, R.A., \emph{Statistical methods for research workers}, London: Oliver
  \& Lloyd, 1925.

\bibitem[{Fisher et~al.(2005)Fisher, Abecasis, Yashar et~al.}]{Fisher2005}
Fisher, S.A. et~al., Meta-analysis of genome scans of age-related macular
  degeneration, \emph{Human Molecular Genetics}, 14:2257--2264, 2005.

\bibitem[{Fisher et~al.(2003)Fisher, Lanchbury, and Lewis}]{Fisher2003}
Fisher, S.A., J.S. Lanchbury, and C.M. Lewis, Meta-analysis of four rheumatoid
  arthritis genome-wide linkage studies - confirmation of a susceptibility
  locus on chromosome 16, \emph{Arthritis and Rheumatism}, 48:1200--1206, 2003.

\bibitem[{Folks(1984)}]{Folks1984}
Folks, L.J., Combination of independent tests, in Krishnaiah, P.R. and P.K.
  Sen, eds., \emph{Handbook of Statistics}, vol.~4, pp. 113--121, New York:
  North-Holland, 1984.

\bibitem[{GAMES and Cooperative"(2003)}]{GAMES}
GAMES and T.T.M.S.G. Cooperative", A meta-analysis of whole genome linkage
  screens in multiple sclerosis, \emph{Journal of Neuroimmunology}, 143:39--46,
  2003.

\bibitem[{Ghosh(2004)}]{Ghosh2004}
Ghosh, D., Mixture models for assessing differential expression in complex
  tissues using microarray data, \emph{Bioinformatics}, 20:1663--1669, 2004.

\bibitem[{Ghosh et~al.(2003)Ghosh, Barette, Rhodes et~al.}]{Ghosh2003}
Ghosh, D. et~al., Statistical issues and methods for meta-analysis of
  microarray data: a case study in prostate cancer, \emph{Functional and
  Integrative Genomics}, 3:180--188, 2003.

\bibitem[{Gu et~al.(1998)Gu, Province, Todorov et~al.}]{Gu1998}
Gu, C. et~al., Meta-analysis methodology for combining non-parametric sibpair
  linkage results: genetic homogeneity and identical markers, \emph{Genetic
  Epidemiology}, 15:609--626, 1998.

\bibitem[{Gu et~al.(2001)Gu, Province, and Rao}]{Gu2001}
Gu, C., M.A. Province, and D.C. Rao, Meta-analysis of genetic studies, in Rao,
  D.C. and M.A. Province, eds., \emph{Genetic Dissection of Complex Traits:
  Challenges for the Next Millennium}, pp. 255--272, San Diego: Academic Press,
  2001.

\bibitem[{Guerra et~al.(1999)Guerra, Etzel, Goldstein et~al.}]{Guerra1999}
Guerra, R. et~al., Meta-analysis by combining p-values: simulated linkage
  studies, \emph{Genetic Epidemiology}, 17 Suppl 1:S605--S609, 1999.

\bibitem[{Haseman and Elston(1972)}]{Haseman1972}
Haseman, J.K. and R.C. Elston, The investigation of linkage between a
  quantitative trait and a marker locus, \emph{Behavior Genetics}, 2:3--19,
  1972.

\bibitem[{Heo et~al.(2002)Heo, Leibel, Fontaine et~al.}]{Heo2002}
Heo, M. et~al., A meta-analytic investigation of linkage and association of
  common leptin receptor {(LEPR)} polymorphisms with body mass index and waist
  circumference, \emph{International Journal of Obesity and Related Metabolic
  Disorders}, 26:640--646, 2002.

\bibitem[{Irizarry et~al.(2003)Irizarry, Bolstad, Collin et~al.}]{Irizarry2003}
Irizarry, R.A. et~al., Summaries of {A}ffymetrix {GeneChip} probe level data,
  \emph{Nucleic Acids Research}, 31:e15, 2003.

\bibitem[{Irizarry et~al.(2004)Irizarry, Gautier, Bolstad et~al.}]{affy}
Irizarry, R.A. et~al., \emph{affy: Methods for Affymetrix Oligonucleotide
  Arrays}, 2004.

\bibitem[{Iyengar and Greenhouse(1988)}]{Iyengar1988}
Iyengar, S. and J.~Greenhouse, Selection models and the file drawer problem,
  \emph{Statistical Science}, 3:109--117, 1988.

\bibitem[{Iyengar et~al.(2001)Iyengar, Jacobs, J. et~al.}]{Iyengar2001}
Iyengar, S.K. et~al., Improved evidence for linkage on 6p and 5p with
  retrospective pooling of data from three asthma genome screens, \emph{Genetic
  Epidemiology}, 21 Suppl 1:S130--S135, 2001.

\bibitem[{Ji et~al.(2005)Ji, Coombes, Zhang et~al.}]{Ji2005}
Ji, Y. et~al., {RefSeq} refinements of {UniGene}-based gene matching improves
  the correlation between microarray platforms, Tech. rep., MD Anderson Cancer
  Center, Department of Biostatistics and Applied Mathematics, 2005.

\bibitem[{Johnson et~al.(2005)Johnson, Luke, Adeyemo et~al.}]{Johnson2005}
Johnson, L. et~al., Meta-analysis of five genome-wide linkage studies for body
  mass index reveals significant evidence for linkage to chromosome 8p,
  \emph{International Journal of Obesity}, 29:413--419, 2005.

\bibitem[{Koivukoski et~al.(2004)Koivukoski, Fisher, Kanninen
  et~al.}]{Koivukoski2004}
Koivukoski, L. et~al., Meta-analysis of genome-wide scans for hypertension and
  blood pressure in {C}aucasians shows evidence of susceptibility regions on
  chromosomes 2 and 3, \emph{Human Molecular Genetics}, 13:2325--2332, 2004.

\bibitem[{Koziol and Feng(2004)}]{Koziol2004}
Koziol, J.A. and A.C. Feng, A note on the genome scan meta-analysis statistic,
  \emph{Annals of Human Genetics}, 68:376--380, 2004.

\bibitem[{Kuo et~al.(2002)Kuo, Jenssen, Butte et~al.}]{Kuo2002}
Kuo, W.P. et~al., Analysis of matched {mRNA} measurements from two different
  microarray technologies, \emph{Bioinformatics}, 18:405--412, 2002.

\bibitem[{Lander and Kruglyak(1995)}]{Lander1995}
Lander, E. and L.~Kruglyak, Genetic dissection of complex traits -- guidelines
  for interpreting and reporting linkage results, \emph{Nature Genetics},
  11:241--247, 1995.

\bibitem[{Levinson et~al.(2002)Levinson, Holmans, Laurent
  et~al.}]{Levinson2002}
Levinson, D.F. et~al., No major schizophrenia locus detected on chromosome 1q
  in a large multicenter sample, \emph{Science}, 296:739--741, 2002.

\bibitem[{Levinson et~al.(2003)Levinson, Levinson, Segurado
  et~al.}]{Levinson2003}
Levinson, D.F. et~al., Genome scan meta-analysis of schizophrenia and bipolar
  disorder, part {I}: Methods and power analysis, \emph{American Journal of
  Human Genetics}, 73:17--33, 2003.

\bibitem[{Lewis et~al.(2003)Lewis, Levinson, Wise et~al.}]{Lewis2003}
Lewis, C.M. et~al., Genome scan meta-analysis of schizophrenia and bipolar
  disorder, part {II}: Schizophrenia, \emph{American Journal of Human
  Genetics}, 73:34--48, 2003.

\bibitem[{Li and Wong(2001)}]{Li2001}
Li, C. and W.H. Wong, Model-based analysis of oligonucleotide arrays:
  Expression index computation and outlier detection, \emph{Proceedings of the
  National Academy of Sciences USA}, 98:31--36, 2001.

\bibitem[{Li and Rao(1996)}]{Li1996}
Li, Z. and D.C. Rao, Random effects model for meta-analysis of multiple
  quantitative sibpair linkage studies, \emph{Genetic Epidemiology},
  13:377--383, 1996.

\bibitem[{Liu et~al.(2004)Liu, Zhao, and Chase}]{Liu2004}
Liu, W., W.~Zhao, and G.A. Chase, Genome scan meta-analysis for hypertension,
  \emph{American Journal of Hypertension}, 17:1100--1106, 2004.

\bibitem[{Lockhart et~al.(1996)Lockhart, Dong, Byrne et~al.}]{Lockhart1996}
Lockhart, D.J. et~al., Expression monitoring by hybridization to high-density
  oligonucleotide arrays, \emph{Nature Biotechnology}, 14:1675--1680, 1996.

\bibitem[{Loesgen et~al.(2001)Loesgen, Dempfle, Golla et~al.}]{Loesgen2001}
Loesgen, S. et~al., Weighting schemes in pooled linkage analysis, \emph{Genetic
  Epidemiology}, 21 Suppl 1:S142--S147, 2001.

\bibitem[{Mah et~al.(2004)Mah, Thelin, Lu et~al.}]{Mah2004}
Mah, N. et~al., A comparison of oligonucleotide and {cDNA}-based microarray
  systems, \emph{Physiological Genomics}, 16:361--370, 2004.

\bibitem[{Marazita et~al.(2004)Marazita, Murray, Lidral et~al.}]{Marazita2004}
Marazita, M.L. et~al., Meta-analysis of 13 genome scans reveals multiple cleft
  lip/palate genes with novel loci on 9q21 and 2q32-35, \emph{American Journal
  of Human Genetics}, 75:161--173, 2004.

\bibitem[{Marshall(2004)}]{Marshall2004}
Marshall, E., Getting the noise out of gene arrays, \emph{Science},
  306:630--631, 2004.

\bibitem[{Mecham et~al.(2004{\natexlab{a}})Mecham, Klus, Strovel
  et~al.}]{Mecham2004a}
Mecham, B.H. et~al., Sequence-matched probes produce increased cross-platform
  consistency and more reproducible biological results in microarray-based gene
  expression measurements, \emph{Nucleic Acids Research}, 32:e74,
  2004{\natexlab{a}}.

\bibitem[{Mecham et~al.(2004{\natexlab{b}})Mecham, Wetmore, Szallasi
  et~al.}]{Mecham2004b}
Mecham, B.H. et~al., Increased measurement accuracy for sequence-verified
  microarray probes, \emph{Physiological Genomics}, 18:308--315,
  2004{\natexlab{b}}.

\bibitem[{Morris et~al.(2005)Morris, Yin, Baggerly et~al.}]{Morris2005}
Morris, J.S. et~al., Pooling information across different studies and
  oligonucleotide microarray chip types to identify prognostic genes for lung
  cancer, in Shoemaker, J. and S.M. Lin, eds., \emph{Methods of Microarray Data
  Analysis IV}, pp. 51--66, New York: Springer-Verlag, 2005.

\bibitem[{Morton(1955)}]{Morton1955}
Morton, N.E., Sequential tests for the detection of linkage, \emph{American
  Journal of Human Genetics}, 7:277--318, 1955.

\bibitem[{Nielsen et~al.(2002)Nielsen, West, Linn et~al.}]{Nielsen2002}
Nielsen, T.O. et~al., Molecular characterization of soft tissue tumours: a gene
  expression study, \emph{Lancet}, 359:1301–--1307, 2002.

\bibitem[{Normand(1999)}]{Normand1999}
Normand, S.L., Meta-analysis: formulating, evaluating, combining and reporting,
  \emph{Statistics in Medicine}, 18:321–--359, 1999.

\bibitem[{North et~al.(2003)North, Curtis, and Sham}]{North2003}
North, B.V., D.~Curtis, and P.C. Sham, A note on the calculation of empirical
  {P} values from {M}onte {C}arlo procedures, \emph{American Journal of Human
  Genetics}, 72:498--499, 2003.

\bibitem[{O'{D}onovan et~al.(2003)O'{D}onovan, Williams, and
  Owen}]{ODonovan2003}
O'{D}onovan, M.C., N.M. Williams, and M.J. Owen, Recent advances in the
  genetics of schizophrenia, \emph{Human Molecular Genetics}, 12:R125--R133,
  2003.

\bibitem[{Ott(1999)}]{Ott1999}
Ott, J., \emph{Analysis of Human Genetic Linkage}, Baltimore, MD: Johns Hopkins
  University Press, 3rd ed., 1999.

\bibitem[{Pardi et~al.(2005)Pardi, Levinson, and Lewis}]{Pardi2005}
Pardi, F., D.F. Levinson, and C.M. Lewis, {GSMA}: software implementation of
  the genome search meta-analysis method, \emph{Bioinformatics}, 21:4430--4431,
  2005.

\bibitem[{Parmigiani et~al.(2004)Parmigiani, Garrett-Mayer, Anbazhagan
  et~al.}]{Parmigiani2004}
Parmigiani, G. et~al., A cross-study comparison of gene expression studies for
  the molecular classification of lung cancer, \emph{Clinical Cancer Research},
  10:2922--2927, 2004.

\bibitem[{Pearson(1933)}]{Pearson1933}
Pearson, K., On a method of determining whether a sample of size n supposed to
  have been drawn from a parent population having a known probability integral
  has probably been drawn at random, \emph{Biometrika}, 25:379--410, 1933.

\bibitem[{Province(2001)}]{Province2001}
Province, M.A., The significance of not finding a gene, \emph{American Journal
  of Human Genetics}, 69:660--663, 2001.

\bibitem[{Province et~al.(2003)Province, Kardia, Ranade et~al.}]{Province2003}
Province, M.A. et~al., A meta-analysis of genome-wide linkage scans for
  hypertension: the {N}ational {H}eart, {L}ung and {B}lood {I}nstitute {F}amily
  {B}lood {P}ressure {P}rogram, \emph{Biometrika}, 16:144--147, 2003.

\bibitem[{Rao(1998)}]{Rao1998}
Rao, D.C., {CAT} scans, {PET} scans, and genomic scans, \emph{Genetic
  Epidemiology}, 15:1--18, 1998.

\bibitem[{Rao and Gu(2001)}]{Rao2001}
Rao, D.C. and C.~Gu, False positives and false negatives in genome scans,
  \emph{Advances in Genetics}, 42:487--498, 2001.

\bibitem[{Rhodes et~al.(2002)Rhodes, Barrette, Rubin et~al.}]{Rhodes2002}
Rhodes, D.R. et~al., Meta-analysis of microarrays: interstudy validation of
  gene expression profiles reveals pathway dysregulation in prostate cancer,
  \emph{Cancer Research}, 62:4427--4433, 2002.

\bibitem[{Rhodes et~al.(2004)Rhodes, Yu, Shanker et~al.}]{Rhodes2004}
Rhodes, D.R. et~al., Large-scale meta-analysis of cancer microarray data
  identifies common transcriptional profiles of neoplastic transformation and
  progression, \emph{Proceedings of the National Academy of Sciences USA},
  101:9309--9314, 2004.

\bibitem[{Rice(1990)}]{Rice1990}
Rice, W.R., A consensus combined p-value test and the family-wide significance
  of component tests, \emph{Biometrics}, 46:303--308, 1990.

\bibitem[{Risch and Merikangas(1996)}]{Risch1996}
Risch, N. and K.~Merikangas, The future of genetic studies of complex human
  diseases, \emph{Science}, 273:1516--1517, 1996.

\bibitem[{Rosenthal(1979)}]{Rosenthal1979}
Rosenthal, R., The "file drawer problem" and tolerance for null results,
  \emph{Psychological Bulletin}, 86:638--641, 1979.

\bibitem[{Rosenthal(1984)}]{Rosenthal1984}
Rosenthal, R., \emph{Meta-Analytic Procedures for Social Research}, Beverly
  Hills, CA: Sage Press, 1984.

\bibitem[{Sagoo et~al.(2004)Sagoo, Tazi-Ahnini, Barker et~al.}]{Sagoo2004}
Sagoo, G.S. et~al., Meta-analysis of genome-wide studies of psoriasis
  susceptibility reveals linkage to chromosomes 6p21 and 4q28-q31 in
  {C}aucasian and {C}hinese {H}ans population, \emph{Journal of Investigative
  Dermatology}, 122:1401--1405, 2004.

\bibitem[{Sawcer et~al.(1990)Sawcer, Jones, Judge et~al.}]{Sawcer1997}
Sawcer, S. et~al., Empirical genomewide significance levels established by
  whole genome simulations, \emph{Genetic Epidemiology}, 14:223--229, 1990.

\bibitem[{Segurado et~al.(2003)Segurado, Detera-Wadleigh, Levinson
  et~al.}]{Segurado2003}
Segurado, R. et~al., Genome scan meta-analysis of schizophrenia and bipolar
  disorder, part {III}: Bipolar disorder, \emph{American Journal of Human
  Genetics}, 73:49--62, 2003.

\bibitem[{Shen et~al.(2004)Shen, Ghosh, and Chinnaiyan}]{Shen2004}
Shen, R., D.~Ghosh, and A.M. Chinnaiyan, Prognostic meta-signature of breast
  cancer developed by two-stage mixture modeling of microarray data, \emph{BMC
  Genomics}, 5:94, 2004.

\bibitem[{S{\o}rlie et~al.(2003)S{\o}rlie, Tibshirani, Parker
  et~al.}]{Sorlie2003}
S{\o}rlie, T. et~al., Repeated observation of breast tumor subtypes in
  independent gene expression data sets, \emph{Proceedings of the National
  Academy of Sciences USA}, 100:8418--8423, 2003.

\bibitem[{Stec et~al.(2005)Stec, Wang, Coombes et~al.}]{Stec2005}
Stec, J. et~al., Comparison of the predictive accuracy of {DNA} array based
  multigene classifiers across {cDNA} arrays and {A}ffymetrix {GeneChips},
  \emph{Journal of Molecular Diagnosis}, 7:357--367, 2005.

\bibitem[{Tan et~al.(2003)Tan, Downey, Spitznagel et~al.}]{Tan2003}
Tan, P.K. et~al., Evaluation of gene expression measurements from commercial
  microarray platforms, \emph{Nucleic Acids Research}, 31:5676--5684, 2003.

\bibitem[{Tippett(1931)}]{Tippett1931}
Tippett, L.H.C., \emph{The Methods of Statistics}, London: Williams \& Norgate,
  1st ed., 1931.

\bibitem[{van Heel et~al.(2004)van Heel, Fisher, Kirby et~al.}]{vanHeel2004}
van Heel, D.A. et~al., Inflammatory bowel disease susceptibility loci defined
  by genome scan meta-analysis of 1952 affected relative pairs, \emph{Human
  Molecular Genetics}, 13:763--770, 2004.

\bibitem[{Wang et~al.(2004)Wang, Coombes, Highsmith et~al.}]{Wang2004}
Wang, J. et~al., Differences in gene expression between {B}-cell chronic
  lymphocytic leukemia and normal {B} cells: a meta-analysis of three
  microarray studies, \emph{Bioinformatics}, 20:3166--3178, 2004.

\bibitem[{Williams et~al.(2002)Williams, Kocher, Lander et~al.}]{Williams2002}
Williams, C.N. et~al., Using a genome-wide scan and meta-analysis to identify a
  novel {IBD} locus and confirm previously identified {IBD} loci,
  \emph{Inflammatory Bowel Diseases}, 8:375--381, 2002.

\bibitem[{Wise(2001)}]{Wise2001}
Wise, L.H., Inclusion of candidate region studies in meta-analysis using the
  genome screen meta-analysis method: application to asthma data, \emph{Genetic
  Epidemiology}, 21 Suppl 1:S160--S165, 2001.

\bibitem[{Wise et~al.(1999)Wise, Lanchbury, and Lewis}]{Wise1999}
Wise, L.H., J.S. Lanchbury, and C.M. Lewis, Meta-analysis of genome searches,
  \emph{Annals of Human Genetics}, 63:263--272, 1999.

\bibitem[{Wright et~al.(2003)Wright, Tan, Rosenwald et~al.}]{Wright2003}
Wright, G. et~al., A gene expression-based method to diagnose clinically
  distinct subgroups of diffuse large {B} cell lymphoma, \emph{Proceedings of
  the National Academy of Sciences USA}, 100:10585--10587, 2003.

\bibitem[{Wu et~al.(2005)Wu, Morris, Baggerly et~al.}]{Wu2005}
Wu, C. et~al., A probe-to-transcripts mapping method for cross-platform
  comparisons of microarray data, Tech. rep., BEPress, 2005.

\bibitem[{Wu et~al.(2002)Wu, Cooper, Borecki et~al.}]{Wu2002}
Wu, X. et~al., A combined analysis of genomewide linkage scans for body mass
  index from the {N}ational {H}eart, {L}ung, and {B}lood {I}nstitute {F}amily
  {B}lood {P}ressure {P}rogram, \emph{American Journal of Human Genetics},
  70:1247--1256, 2002.

\bibitem[{Zhang et~al.(2003)Zhang, Miles, and Aldape}]{Zhang2003}
Zhang, L., M.F. Miles, and K.D. Aldape, A model of molecular interactions on
  short oligonucleotide microarrays, \emph{Nature Biotechnology}, 21:818--821,
  2003.

\bibitem[{Zintzaras and Ioannidis(2005{\natexlab{a}})}]{HEGESMA}
Zintzaras, E. and J.P. Ioannidis, {HEGESMA}: genome search meta-analysis and
  heterogeneity testing, \emph{Bioinformatics}, 21:3672--3673,
  2005{\natexlab{a}}.

\bibitem[{Zintzaras and Ioannidis(2005{\natexlab{b}})}]{Zintzaras2005}
Zintzaras, E. and J.P.A. Ioannidis, Heterogeneity testing in meta-analysis of
  genome searches, \emph{Genetic Epidemiology}, 28:123--137,
  2005{\natexlab{b}}.

\end{thebibliography}
