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Underfull \hbox (badness 10000) has occurred while \output is active [][][][] [] [1 ] Underfull \hbox (badness 10000) has occurred while \output is active [][][][] [] [2 ] (MetaBookFinal.toc LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <10> not available (Font) Font shape `OT1/ptm/b/n' tried instead on input line 1. Underfull \hbox (badness 10000) has occurred while \output is active [][][][] [] [3]) \tf@toc=\write4 [1] (EtzelRev1.tex Underfull \vbox (badness 10000) detected at line 2 [] Overfull \hbox (336.25pt too wide) detected at line 2 [] [] Underfull \vbox (badness 10000) detected at line 2 [] Overfull \hbox (336.25pt too wide) detected at line 2 [] [] Underfull \vbox (badness 10000) detected at line 2 [] Overfull \hbox (336.25pt too wide) detected at line 2 [] [] Underfull \vbox (badness 10000) detected at line 2 [] Overfull \hbox (336.25pt too wide) detected at line 2 [] [] Underfull \hbox (badness 10000) has occurred while \output is active [][][][] [] [2 ] CHAPTER 1. Underfull \hbox (badness 10000) has occurred while \output is active [][][][] [] [3] [4] [5] [6] [7] Overfull \hbox (1.5462pt too wide) in paragraph at lines 251--261 [][]\OT1/ptm/m/n/10 Since its orig-i-nal pub-li-ca-tion, the GSMA has been the most widely used meta-analytic [] [8] [9] Underfull \vbox (badness 1668) has occurred while \output is active [] [10] [11] [12] [13]) [14] (Lewis1.tex Underfull \vbox (badness 10000) detected at line 19 [] Overfull \hbox (336.25pt too wide) detected at line 19 [] [] Underfull \vbox (badness 10000) detected at line 19 [] Overfull \hbox (336.25pt too wide) detected at line 19 [] [] Underfull \vbox (badness 10000) detected at line 19 [] Overfull \hbox (336.25pt too wide) detected at line 19 [] [] Underfull \vbox (badness 10000) detected at line 19 [] Overfull \hbox (336.25pt too wide) detected at line 19 [] [] CHAPTER 2. Underfull \vbox (badness 1648) has occurred while \output is active [] Underfull \hbox (badness 10000) has occurred while \output is active [][][][] [] [15 ] Overfull \hbox (1.18701pt too wide) in paragraph at lines 106--112 \OT1/ptm/m/n/10 oped to cir-cum-vent some com-mon prob-lems of per-form-ing meta-analysis on genome- [] [16] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 146. Adding sideways figure on left hand page [17] [18] [19] [20] Adding sideways figure on left hand page Overfull \hbox (212.68643pt too wide) in paragraph at lines 514--537 []\OT1/ptm/m/n/10 Software to per-form GSMA on genome-wide link-age stud-ies is avail-able from [] [] [21] [22] [23] File: Lewis_rankpval.ps Graphic file (type eps) Overfull \hbox (24.8585pt too wide) in paragraph at lines 611--612 [][] [] [24] Underfull \vbox (badness 2401) has occurred while \output is active [] [25] Underfull \vbox (badness 1558) has occurred while \output is active [] [26] [27] [28]) [29] (MorrisRev1.tex Underfull \vbox (badness 10000) detected at line 6 [] Overfull \hbox (336.25pt too wide) detected at line 6 [] [] Underfull \vbox (badness 10000) detected at line 6 [] Overfull \hbox (336.25pt too wide) detected at line 6 [] [] Underfull \vbox (badness 10000) detected at line 6 [] Overfull \hbox (336.25pt too wide) detected at line 6 [] [] Underfull \vbox (badness 10000) detected at line 6 [] Overfull \hbox (336.25pt too wide) detected at line 6 [] [] Underfull \hbox (badness 10000) has occurred while \output is active [][][][] [] [30 ] CHAPTER 3. Underfull \hbox (badness 10000) has occurred while \output is active [][][][] [] [31] Overfull \hbox (0.10825pt too wide) in paragraph at lines 38--49 \OT1/ptm/m/n/10 volve mi-croar-rays, with over 3000 pub-lished in 2004 alone (http://www.ncbi.nlm.nih. [] Overfull \hbox (67.47653pt too wide) in paragraph at lines 50--65 \OT1/ptm/m/n/10 ries in which mi-croar-ray data are posted, in-clud-ing Ar-ray-Ex-press (http://www.ebi.ac.uk/arrayexpre ss/) [] [32] [33] Overfull \hbox (1.11862pt too wide) in paragraph at lines 170--196 \OT1/ptm/m/n/10 hybridization, al-ter-na-tive splic-ing, in-ac-cu-rate an-no-ta-tion of gene se-quences, and RNA [] Underfull \vbox (badness 10000) has occurred while \output is active [] [34] Overfull \hbox (4.01111pt too wide) in paragraph at lines 198--207 \OT1/ptm/m/n/10 ``probes,'' or short se-quences of nu-cleotides from the tar-get gene se-quence. Affymetrix, [] Package natbib Warning: Citation `Pope2004' on page 35 undefined on input line 218. [35] Overfull \hbox (4.6771pt too wide) in paragraph at lines 220--228 \OT1/ptm/m/n/10 archive of DNA se-quence in-for-ma-tion, Uni-Gene (http://www.ncbi.nlm.nih.gov/entrez/ [] Underfull \vbox (badness 10000) has occurred while \output is active [] [36] File: Morris_probeset_sizes.ps Graphic file (type eps) Overfull \hbox (22.74023pt too wide) in paragraph at lines 304--322 \OT1/ptm/m/n/10 com-pe-ti-tion (http:/www.camda.duke.edu/camda2003). These stud-ies both used Affymetrix [] [37] [38] Overfull \hbox (7.36711pt too wide) in paragraph at lines 363--379 []\OT1/ptm/m/n/10 Before an-a-lyz-ing the mi-croar-ray data to iden-tify prog-nos-tic genes, we as-sessed whether [] File: Morris_comparable.ps Graphic file (type eps) [39] File: Morris_precision.ps Graphic file (type eps) Underfull \vbox (badness 10000) has occurred while \output is active [] [40] [41] File: Morris_prognostic_pvals.ps Graphic file (type eps) [42] [43] Overfull \hbox (2.08714pt too wide) in paragraph at lines 577--589 \OT1/ptm/m/n/10 man genome by com-bin-ing records in Ref-Seq (http://www.ncbi.nlm.nih.gov/RefSeq/) [] [44] File: Morris_hist_probeset_size_FLTBP.eps Graphic file (type eps) Overfull \hbox (0.715pt too wide) in paragraph at lines 629--632 [][] [] Overfull \hbox (4.02684pt too wide) in paragraph at lines 636--644 \OT1/ptm/m/n/10 has their own method for map-ping probe-sets be-tween dif-fer-ent chip types (http://www. [] [45] Overfull \hbox (2.44095pt too wide) in paragraph at lines 663--670 \OT1/ptm/m/n/10 com-pet-ing meth-ods, RMA (Irizarry et al., 2003), MAS5 (http://www. affymetrix.com/ [] File: Morris_gene-gene_cor.ps Graphic file (type eps) [46] File: Morris_boxplot.ps Graphic file (type eps) Underfull \vbox (badness 10000) has occurred while \output is active [] [47] [48]) [49] (MetaBookFinal.bbl Underfull \hbox (badness 10000) has occurred while \output is active [][][][] [] [50 ] ! LaTeX Error: \newblock undefined. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.1 \begin{thebibliography}{97} Try typing to proceed. If that doesn't work, type X to quit. Underfull \vbox (badness 2698) has occurred while \output is active [] Underfull \hbox (badness 10000) has occurred while \output is active [][][][] [] [51] Underfull \vbox (badness 10000) has occurred while \output is active [] [52] Underfull \vbox (badness 10000) has occurred while \output is active [] [53] Underfull \hbox (badness 1082) in paragraph at lines 259--261 [][]\OT1/ptm/m/n/10 Lockhart, D.J. et al., Ex-pres-sion mon-i-tor-ing by hy-bridiza-tion to high-density [] Missing character: There is no – in font ptmr7t! Missing character: There is no – in font ptmr7t! Underfull \vbox (badness 10000) has occurred while \output is active [] [54] Underfull \vbox (badness 10000) has occurred while \output is active [] [55]) (MetaBookFinal.ind) Package natbib Warning: There were undefined citations. 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