Siefert Research Links

Metabolism (Graphic verions)

Metabolic activity
Ecology
Global contribution if estimated
Evolution
References
Fe (III) Respiration Aquatic sediments, submerged soils, aquifers, anaerobic

One of the most geochemically significant events that naturally takes place in soils, aquatic sediments, and subsurface environments. May be responsible for deposition of BIFs

Flux could be CO2; in the absence of Fe (III) produce H2.

Presence of this metabolism in most all of the most deeply branching lineages in 16s tree, using H2 to reduce FE(III), allows for the speculation that it is ancient. D. Lovley, Ken Nealson
Fe (II) Oxidation Quiet water, edge of lakes

These organisms have also been implicated in the massive ancient deposits of magnetite.

No flux.

Chemollithoautotrophic iron oxidation by Thiobacillus and Leptothrix (Beta Proteobacter) or by photoferrotrophy Rhodomicrobium -alpha proteobacter, Chlorobium, Chloroflexus Konhauser, Hiesing

Sulfate Reduction

see Crens sulfur

reducers

Sulfur Cycle, pre- post industrialization all aquatic sediments, ranging from cold -> geothermal; rice paddies; frequently in competion with H2 metabolizers (primarily methanogens)

Flux of H2S

 

Widespread and considered to be ancient (Shen, Buick, Canfield, 2001) Hansen, Widdell
Sulfide Oxidation marine/freshwater soils, sediments at the interface of oxygen and H2S; treatment plants; usually in close association with sulfate reducers; in symbiosis at hydrothermal vents in with various euks Produces Sulfate and elemental sulfur (S8) which can accumulate on the outside of some species. Some archaea, species in all groups of proteobacter, most are aerobic, a few are anaerobic using nitrogen oxides (nitrate). The metabolic capacity for sulfide oxidation belies the diversity of pathways that the organisms exhibit. This is considered to be convergent evolution. Lesley Robertson, J. Gijs Kuenen
Photo-
synthesis

See: photosynthesis nitrogen fixers reshwater and thin matts are heterocystic organic poor.

they need the ability t o lower nitrogen at night

, heterocysts dominate marine environments, non-heterocysts dominate fresh.

Methano-
genesis

Anoxic environments, rice paddies, vent systems
Flux of CH4
Restricted to one monophyletic branch of the Euryarchaeota within the Archaea
Ferry
Nitrogen        
Facts and Databases

Micro*Scope

Pro-Links Database

 

Favorite Research Links at Rice
(outside Siefert Lab)

 
Geology

Outside Interests

Puzzles
Professional Associations
Links